Malaysia expects its close relations with Indonesia to remain unaffected by the resignation of Vice President Gibran Rakabuming Raka, which has triggered a political shake-up in its Asean neighbour.

Communications Minister Fahmi Fadzil expressed confidence that bilateral cooperation would continue despite the political developments in Jakarta, where Gibran - the oldest son of former president Joko Widodo - stepped down yesterday amid mounting controversy over his eligibility to hold office.

"I just returned from Jakarta a few weeks ago. Deputy Prime Minister Ahmad Zahid Hamidi also made an official visit to Indonesia, during which he met with the Indonesian president, among others.

"We believe the good relations between our two countries will remain strong and enduring, regardless of the political developments," Fahmi told reporters today.